{
  "num_helices": 2,
  "helices": [
    {
      "index": 1,
      "num_stems": 0,
      "strand1": "ATCCGTGCCTGGAGACTAGGGAGT",
      "strand2": "TAGGCACGGACCTCTGATCCCTCA",
      "bp_type": "||||||||||||||||||||||||",
      "helix_form": "BBBBBBBB.B........B....",
      "num_pairs": 24,
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        {
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        {
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        {
          "index": 22,
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          "nt2": "///J/34",
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      "bp_type": "|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||",
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      "num_pairs": 103,
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          "DSSR": "cW-W"
        },
        {
          "index": 52,
          "nt1": "///I/21",
          "nt2": "c. J & i. \\-21",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 53,
          "nt1": "///I/22",
          "nt2": "c. J & i. \\-22",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 54,
          "nt1": "///I/23",
          "nt2": "c. J & i. \\-23",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 55,
          "nt1": "///I/24",
          "nt2": "c. J & i. \\-24",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 56,
          "nt1": "///I/25",
          "nt2": "c. J & i. \\-25",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 57,
          "nt1": "///I/26",
          "nt2": "c. J & i. \\-26",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 58,
          "nt1": "///I/27",
          "nt2": "c. J & i. \\-27",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 59,
          "nt1": "///I/28",
          "nt2": "c. J & i. \\-28",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 60,
          "nt1": "///I/29",
          "nt2": "c. J & i. \\-29",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 61,
          "nt1": "///I/30",
          "nt2": "c. J & i. \\-30",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 62,
          "nt1": "///I/31",
          "nt2": "c. J & i. \\-31",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 63,
          "nt1": "///I/32",
          "nt2": "c. J & i. \\-32",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 64,
          "nt1": "///I/33",
          "nt2": "c. J & i. \\-33",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 65,
          "nt1": "///I/34",
          "nt2": "c. J & i. \\-34",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 66,
          "nt1": "///I/35",
          "nt2": "c. J & i. \\-35",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 67,
          "nt1": "///I/36",
          "nt2": "c. J & i. \\-36",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 68,
          "nt1": "///I/37",
          "nt2": "c. J & i. \\-37",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 69,
          "nt1": "///I/38",
          "nt2": "c. J & i. \\-38",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 70,
          "nt1": "///I/39",
          "nt2": "c. J & i. \\-39",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 71,
          "nt1": "///I/40",
          "nt2": "c. J & i. \\-40",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 72,
          "nt1": "///I/41",
          "nt2": "c. J & i. \\-41",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 73,
          "nt1": "///I/42",
          "nt2": "c. J & i. \\-42",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 74,
          "nt1": "///I/43",
          "nt2": "c. J & i. \\-43",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 75,
          "nt1": "///I/44",
          "nt2": "c. J & i. \\-44",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 76,
          "nt1": "///I/45",
          "nt2": "c. J & i. \\-45",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 77,
          "nt1": "///I/46",
          "nt2": "c. J & i. \\-46",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 78,
          "nt1": "///I/47",
          "nt2": "c. J & i. \\-47",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 79,
          "nt1": "///I/48",
          "nt2": "c. J & i. \\-48",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 80,
          "nt1": "///I/49",
          "nt2": "c. J & i. \\-49",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 81,
          "nt1": "///I/50",
          "nt2": "c. J & i. \\-50",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 82,
          "nt1": "///I/51",
          "nt2": "c. J & i. \\-51",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 83,
          "nt1": "///I/52",
          "nt2": "c. J & i. \\-52",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 84,
          "nt1": "///I/53",
          "nt2": "c. J & i. \\-53",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 85,
          "nt1": "///I/54",
          "nt2": "c. J & i. \\-54",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 86,
          "nt1": "///I/55",
          "nt2": "c. J & i. \\-55",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 87,
          "nt1": "///I/56",
          "nt2": "c. J & i. \\-56",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 88,
          "nt1": "///I/57",
          "nt2": "c. J & i. \\-57",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 89,
          "nt1": "///I/58",
          "nt2": "c. J & i. \\-58",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 90,
          "nt1": "///I/59",
          "nt2": "c. J & i. \\-59",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 91,
          "nt1": "///I/60",
          "nt2": "c. J & i. \\-60",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 92,
          "nt1": "///I/61",
          "nt2": "c. J & i. \\-61",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 93,
          "nt1": "///I/62",
          "nt2": "c. J & i. \\-62",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 94,
          "nt1": "///I/63",
          "nt2": "c. J & i. \\-63",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 95,
          "nt1": "///I/64",
          "nt2": "c. J & i. \\-64",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 96,
          "nt1": "///I/65",
          "nt2": "c. J & i. \\-65",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 97,
          "nt1": "///I/66",
          "nt2": "c. J & i. \\-66",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 98,
          "nt1": "///I/67",
          "nt2": "c. J & i. \\-67",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 99,
          "nt1": "///I/68",
          "nt2": "c. J & i. \\-68",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 100,
          "nt1": "///I/69",
          "nt2": "c. J & i. \\-69",
          "bp": "T-A",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 101,
          "nt1": "///I/70",
          "nt2": "c. J & i. \\-70",
          "bp": "C-G",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 102,
          "nt1": "///I/71",
          "nt2": "c. J & i. \\-71",
          "bp": "G-C",
          "name": "WC",
          "Saenger": "19-XIX",
          "LW": "cWW",
          "DSSR": "cW-W"
        },
        {
          "index": 103,
          "nt1": "///I/72",
          "nt2": "c. J & i. \\-72",
          "bp": "A-T",
          "name": "WC",
          "Saenger": "20-XX",
          "LW": "cWW",
          "DSSR": "cW-W"
        }
      ]
    }
  ],
  "num_ntAA_contacts": 6,
  "ntAA_contacts": [
    {
      "index": 1,
      "ntaa": "G-arg",
      "nt": "c. I & i. \\-8",
      "aa": "///E/40",
      "trs_dist": -12.679,
      "rot_dist": 49.850,
      "six_params": [
        -11.958,
        4.137,
        -0.820,
        15.235,
        -25.486,
        40.504
      ],
      "C_alpha": [
        -12.336,
        0.123,
        -2.881
      ]
    },
    {
      "index": 2,
      "ntaa": "T-arg",
      "nt": "///I/9",
      "aa": "///A/40",
      "trs_dist": 11.425,
      "rot_dist": 114.353,
      "six_params": [
        -0.023,
        11.130,
        -2.579,
        29.465,
        1.979,
        111.810
      ],
      "C_alpha": [
        -9.474,
        6.355,
        0.339
      ]
    },
    {
      "index": 3,
      "ntaa": "A-arg",
      "nt": "///I/17",
      "aa": "///A/63",
      "trs_dist": -12.722,
      "rot_dist": -77.650,
      "six_params": [
        -7.743,
        9.904,
        1.954,
        -76.669,
        11.625,
        -4.389
      ],
      "C_alpha": [
        -7.478,
        9.524,
        -3.884
      ]
    },
    {
      "index": 4,
      "ntaa": "G-arg",
      "nt": "c. J & i. \\-24",
      "aa": "///A/83",
      "trs_dist": 13.235,
      "rot_dist": 120.248,
      "six_params": [
        2.884,
        12.726,
        -2.213,
        20.931,
        -67.846,
        104.550
      ],
      "C_alpha": [
        -8.269,
        10.126,
        1.973
      ]
    },
    {
      "index": 5,
      "ntaa": "C-arg",
      "nt": "///J/8",
      "aa": "///E/40",
      "trs_dist": 12.746,
      "rot_dist": 141.086,
      "six_params": [
        -4.064,
        12.079,
        -0.210,
        24.913,
        -20.807,
        139.402
      ],
      "C_alpha": [
        -12.625,
        0.192,
        1.663
      ]
    },
    {
      "index": 6,
      "ntaa": "G-arg",
      "nt": "///J/9",
      "aa": "///E/40",
      "trs_dist": -11.883,
      "rot_dist": 110.429,
      "six_params": [
        -0.108,
        11.322,
        -3.607,
        11.894,
        -31.667,
        106.789
      ],
      "C_alpha": [
        -8.904,
        7.500,
        -2.320
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    }
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  "num_bpAA_contacts": 5,
  "bpAA_contacts": [
    {
      "index": 1,
      "bpaa": "GC-arg",
      "z_directions": "+",
      "nt1": "c. I & i. \\-8",
      "nt2": "///J/8",
      "aa": "///E/40",
      "trs_dist": -12.707,
      "rot_dist": 50.644,
      "six_params": [
        -12.019,
        4.111,
        -0.307,
        18.023,
        -25.221,
        40.554
      ],
      "C_alpha": [
        -12.491,
        -0.012,
        -2.272
      ]
    },
    {
      "index": 2,
      "bpaa": "AT-arg",
      "z_directions": "+",
      "nt1": "///I/17",
      "nt2": "c. J & i. \\-17",
      "aa": "///A/63",
      "trs_dist": -14.039,
      "rot_dist": -85.461,
      "six_params": [
        -8.835,
        10.905,
        -0.357,
        -83.132,
        11.421,
        -17.945
      ],
      "C_alpha": [
        -7.800,
        9.561,
        -6.685
      ]
    },
    {
      "index": 3,
      "bpaa": "GC-arg",
      "z_directions": "-",
      "nt1": "c. J & i. \\-24",
      "nt2": "///I/24",
      "aa": "///A/83",
      "trs_dist": 13.261,
      "rot_dist": 120.430,
      "six_params": [
        2.716,
        12.769,
        -2.329,
        19.585,
        -66.011,
        105.940
      ],
      "C_alpha": [
        -8.473,
        10.055,
        1.600
      ]
    },
    {
      "index": 4,
      "bpaa": "AT-arg",
      "z_directions": "+",
      "nt1": "c. J & i. \\-9",
      "nt2": "///I/9",
      "aa": "///A/40",
      "trs_dist": -11.430,
      "rot_dist": 77.087,
      "six_params": [
        -11.073,
        -0.096,
        2.833,
        -5.551,
        -29.611,
        71.815
      ],
      "C_alpha": [
        -9.234,
        -6.715,
        -0.091
      ]
    },
    {
      "index": 5,
      "bpaa": "GC-arg",
      "z_directions": "-",
      "nt1": "///J/9",
      "nt2": "c. I & i. \\-9",
      "aa": "///E/40",
      "trs_dist": -11.884,
      "rot_dist": 109.863,
      "six_params": [
        -0.291,
        11.459,
        -3.137,
        14.300,
        -28.886,
        106.538
      ],
      "C_alpha": [
        -9.230,
        7.278,
        -1.672
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    }
  ],
  "num_phosAA_hbonds": 51,
  "phosAA_hbonds": [
    {
      "index": 1,
      "nt_atom": "c. I & i. \\-44 & n. OP1",
      "aa_atom": "///G/32/NE",
      "dist": 3.033,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 2,
      "nt_atom": "c. I & i. \\-44 & n. OP1",
      "aa_atom": "///G/32/NH2",
      "dist": 2.332,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 3,
      "nt_atom": "c. I & i. \\-42 & n. OP1",
      "aa_atom": "///G/20/NH2",
      "dist": 2.795,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 4,
      "nt_atom": "c. I & i. \\-33 & n. OP1",
      "aa_atom": "///H/86/NH2",
      "dist": 3.788,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 5,
      "nt_atom": "c. I & i. \\-23 & n. OP1",
      "aa_atom": "///E/72/NH1",
      "dist": 2.591,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 6,
      "nt_atom": "c. I & i. \\-23 & n. OP1",
      "aa_atom": "///E/72/NH2",
      "dist": 2.640,
      "type": "po4:sidechain:salt-bridge"
    },
    {
      "index": 7,
      "nt_atom": "c. I & i. \\-22 & n. OP1",
      "aa_atom": "///F/20/NZ",
      "dist": 3.561,
      "type": "po4:sidechain:salt-bridge"
    },
    {
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