Summary information and primary citation
- PDB-id
-
9oh2;
DSSR-derived features in text and
JSON formats; DNAproDB
- Class
- DNA binding protein
- Method
- cryo-EM (3.14 Å)
- Summary
- cryo-EM analysis of human h2a.z on methylated 601l
DNA
- Reference
-
Shih RM, Arimura Y, Konishi HA, Funabiki H (2026):
"Impacts of DNA methylation on H2A.Z deposition and
nucleosome stability." Elife. doi: 10.7554/elife.109762.2.
- Abstract
-
List of 5 5mC-amino acid contacts
- The contacts include paired nucleotides (mostly a G in
Watson-Crick G-C pairing) and amino-acids within a 4.5-Å
distance cutoff to base atoms of 5mC.
- The structure is oriented in the base reference frame
of 5mC, allowing for easy comparison and direct
superimposition between entries.
- The black sphere (•) denotes the
5-methyl carbon atom in 5mC.
No. 1 I.5CM-8: other-contacts
is-WC-paired is-in-duplex [+]:AcG/cGT
No. 2 I.5CM7: other-contacts
is-WC-paired is-in-duplex [+]:AcG/cGT
No. 3 I.5CM49: other-contacts
is-WC-paired is-in-duplex [+]:GcG/cGC
No. 4 J.5CM-8: other-contacts
is-WC-paired is-in-duplex [-]:cGT/AcG
No. 5 J.5CM7: other-contacts
is-WC-paired is-in-duplex [-]:cGT/AcG
